Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MMNTDETIFALSTVFGKSGVAVIRISGNHAL----KALNHFHVNKDMKPRF---ATLVDLYDSSDQLIDNGIAIYFPAPNSFTGEDVIELQVHGGKAVIKIVLE-ELSRIFVMAKPGEFLLRAFLNGKFDLTQIEGIADLIDAETKMQAKQAIKQMSGELEKLYSSWRQRLIAVQSKIEAYIDFPEDVATEKNELEKINDEVQTLVQSIQEHLNDNRRGERLREGLHIVITGEPNVGKSTLFNFLARRDIAIVSEYVGTTRDILEAHIDIGGYPIILSDTAGIRESSDPVESEGISRAKKRSCEADLRIELFPF-EQRYNINCNVI--------SSNTIYVLSKADDVINDHDI--KISD---IDFLPVSILKGIGTEKLVSVIKEKVEEKFVYDRDVPVITRQRHRNCMQKAIEHLRR----FNMNNPIELVSEDLRLAASELGVVTGIINVEEVLDDIFNNFCVGK |
| 3GEI Chain:B ((18-476)) | -------IAAIATPVGVGALAIVRISGAGVLDLADRVFRKVHGSGKLAEAAGYTAHFGRLYDG-EEMVDEVIALVFRAPRSFTAEQMVEFTCHGGPVVVGRVLRLMLDNGCRLAEPGEFTRRAFLNGRIDLLQAEAIGEMIHARTESAYRTAVSQMKGDLSVRLGGLREQLIRSCALIELELDFSEE-DVEFQSRDELTMQIETLRSEVNRLIDSYQHGRIVSEGVSTVIAGKPNAGKSTLLNTLL------------------EECFIHDKTMFRLTD--------------------MKMAEADLILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDRAANADALIRAIADGTGTEVIGISALNGDGIDTLKQHMGDLVK--------SVLVTSLRHYEALRNASDALQNALELIAHESETELIAFELRAALDYVGQITGKVVNEEVLNTIFDKFCIGK |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GEI.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -202983 for 2906 contacts (-69.8/contact) +
2D Compatibility (PS) -42575 + (NN) -19553 + (LL) 3572
1D Compatibility (HY) -23200 + (ID) 6400
Total energy: -291139.0 ( -100.19 by residue)
QMean score : 0.466
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