Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MFLKVFKSIFLFLVSILFVCPILSLVSILFTESTNSEWVISTLFPEYILNTLILMIGVGSISFIFGVIPAWLTTFFSFPGSRIFEVALFFPISIPGYIISFVYVNSLEFSGPTQSLLREIFHWGKGDYWFPEIKSLGGGILVMGFSLYTYVYILVRSNLKNVSNSVTVASTLGFSSLQSLFSVVIPSIRPSIIAGISLVLMEVITDFGTPQFLAIDTFTTGIYRTWFLLHDKYSAAVLAVAELVFITALIAVEKILQKKEISYSAINTNSDYHNKRSISGAIPLVFAYAMCILPILVGFALPIIPLIYWSIEKGFFIY-GAR----FYNIIANSIGLSFITAMISVSIAIMIGCTARKN--KVINNIARLISLGYAIPNAVIAISIIIFLSKISSFITQYFTE-----ISL----VGTVGALIYSYLFRFFAISFKAIESGLKKTPNEIEWIAYTMGHGPISTCLNIHIPLIKKSILSGFLLVFMDTIKELTATLIIRPFN------------FETISTRIYELVS----DERYREAAPFSLMIVITGLISTIILFKLDDENKK |
3RLF Chain:F ((256-503)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TVTTGWKNFTRVFTDEGIQKPFLAIFVWTVVFSLITVFLTVAVGMVLACLVQWEALRGKAVYRVLLILPYAVPSFISILIFKGLFNQSFGEINMMLSALFGVKPAWFSDPTTARTMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGPDRLGTTTPAGYTDLLVNYTYRIAFEGGGGQDFGLAAAIATLIFLLVGALAI----------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3RLF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -142262 for 1470 contacts (-96.8/contact) +
2D Compatibility (PS) -21908 + (NN) -239 + (LL) 26036
1D Compatibility (HY) -14400 + (ID) 1550
Total energy: -154323.0 ( -104.98 by residue)
QMean score : 0.230
|
|
|