Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MVIVLKLP---EVT--VNWSYPVLNFDLSFRIILISFLSVAFLIVLPAKNFSFSEMLSFFAYTISSLCAILSKQIISVIIFCELMAISASFIIAAGCKDNGPAIRYACVHFFVGIILTAGLAIQNPNLIIMGLLIICACFPFSFWVVDAYPAASLHGASYLSLFTTKISFLIALLHTYNLWQDHAEILAFLGTITAIYGIIFTSLEQNIRRFLAYNVVGQMGILIMTGSLLSHSKNAIPLLILNIIFSIVYQLLLTAVANSIILRTKAVNFNRVGKFMSAEGIYALIAILTMAAFPGTAGFISKSYIAVEIKMNGTNLELYKNLHKILNLSLYLSVGLKFLYYIFITKSRSKLLAEKGGGVAMIILASICVIAGNPYLPIYNKPSIFNLAYNTKNIWSQLNLLLCVTLLFIPLRKLFLPRINLKMDIDWIFRALIPYVVSLFNKLIFKMRKISAGALQNLTNSLTNLYFNNANKLKEALSYDSVSFISASSLFLMSILLVLLCLNH |
3WL8 Chain:A ((23-358)) | --VKWECPAGYEVKEGLNVDFPHKGMKRAFIVYPAKNVSGPAPVWVPMTG-SVESTNDNLTVARSGANSILADHGYTVIAPVRACANQDPNIRGERCNGPGSN----------------------------G-------WNWNPWF--EGRAADPSGEHWKNDEGPDSSFFVAMVQCVGTKYKLDARRLFLGGIA--------SGGTMTNRALLFRSNFWAGGLPISGEWYVTSDDGTPLS-------------FDDARAAVAAAPTKIHQGRVGPYPLPAKVGPLIVMTVW----------------------GGEKDLWNCTRP--DGSRFLCAD-----YRPSTQAGSNFFSAQ--------------------------PDVVHVACSSTH-------------------GHMWPQLNTQEFNRWALDTLASHPKG-SDPRSFKLTQPPEG-YTCHVGPFTGLYASAWS--------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3WL8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -317225 for 3081 contacts (-103.0/contact) +
2D Compatibility (PS) -34583 + (NN) 1540 + (LL) 17056
1D Compatibility (HY) -2800 + (ID) 3150
Total energy: -339162.0 ( -110.08 by residue)
QMean score : 0.221
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