Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKYTQLFISVIALVISLFAGYKVVKHQPQSVLNIKVAIIDSDKVINESLALHNIQQQIKEQNSKLQQEFENELDKLKPSKEELELLSEEAKKERAEQFNKLALNARDNYTKKMSYLEESYRDAVDSVFNKIKEVAKKTAEKNNIDLVLFISKKNQVLYSMN-EIDLSDVVLKNINKEIPEFTLKGVN |
1U2M Chain:A ((21-161)) | --------------------------------ADKIAIVNMGSLFQQVAQKTGVSNTLE--------------------------------------------------------RARRSNEERGKLVTRIQTAVKSVANSQDIDLVVD---ANAVAYNSSDVKDITADVLKQVK------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1U2M.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 20209 for 486 contacts (41.6/contact) +
2D Compatibility (PS) -8398 + (NN) 88 + (LL) 8700
1D Compatibility (HY) 4000 + (ID) 500
Total energy: 24099.0 ( 49.59 by residue)
QMean score : 0.193
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