Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNNNDPTVNLPISIRKLSSNKFIEEICQDQFEDQDNALFEDSFINKIKEGDVVEGIITRVNPNDIVVHIGLKSDGRIPIKELGCNDKIVVGSKIRVYVERIEDYHGNVVLSREKAIRDEKWNKLEEDAVTKAEVSGVIKRSIKCGFIVDLGDGISAFLPLSHVDLKQVKDARHLIETEQKFIVLKMDKKQGNIVVSRKLVLEKLHAGEKTKFLEFLNEGDIIEGKIKSIT-HYGVFVGIHESDAVGV-IDGLLHITDISWSRVSHPSAAFACGQIIKVKIIKIDKENAKVSLGIKQLE--DNPWQDVESKYQVDSIHKGHITSIEDYGLFVEL-KPGIEGLVHSSEITWVKSNLPVNSLVTRGQEVSVKILNVDITKNRMSLSMKRCVDNPWQVFVNKYPPGSIVSGKVKNNTISYMSITFNDDEIDENVEGTIYAQDLSWSKNGSDEIKKYNVGDTIEAKVIRANVNRTRIYLGIKQIEYDPLIELIKKVKVGDKMQVTVGKREDSGLVVEVENDVALLIDQEHLPESKKFSISDKIEVEVLGVEEYNVILSAK |
| 3GO5 Chain:A ((3-223)) | ------------------------------------------------------------------------------------------------------------------------------NTNLASFIVGLIIDENDRFYFVQKD-GQTYALAKEEG--------QHTVGDTVKGFAYT-DM-KQKLRLTTLEV--------------TATQDQFGWGRVTEVRKDLGVFVDTG-----LPDKEIVVSLDILP-EL---KELWPKKGDQLYIRL-EVDK-KDRIWGLLAYQEDFQRLARPA-YNNMQNQNWPAIVYRLKLSGTFVYLPENNMLGFIHPSERYA---------EPRLGQVLDARVIGFREVDRTLNLSLKPRSFEMLENDAQMILTYLESNGGFMTLNDKSSPDDIKATFGISKGQFKKALGGLMKAGKIKQDQFGTELI---------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GO5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -115017 for 1588 contacts (-72.4/contact) +
2D Compatibility (PS) -22610 + (NN) 1953 + (LL) 17464
1D Compatibility (HY) -2800 + (ID) 1550
Total energy: -122560.0 ( -77.18 by residue)
QMean score : 0.401
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