Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRISNFGPLIAILSSSVLSFTAGQYFSYVIAAVSS---SSAVTAAPLAIFAVSMVIALVSAAYLIKLAVSIAGNKKEAGPSREALDRSGQQCTVSYGLTQESVCKDGALKNELNKHISFSSSSPICGTKTFSLSAPLLLNNALPPLLSLPLSQDAGAAPPPPPPPLFSQISLTQPSSAGLFAGVKNTKLKKISGPVKTPEYDDSRNAMLKQIRQGTKLLTKEERDEKLKKQAAMKDDKKEQSSDNVGGYSSTALFEKLKYRRLAIEFSDSESDRSNYSDNGDWSDRSVDKQKELREKKLTKRRGKSTSSNSQPYDEKSSATPSSGYISDDDADQQEPETATSSSCWSNKKEPPPVPPKPNLKCVNLQKEPPPVPPKPNLKCVNLQKESRAFLIKQ |
| 1A87 Chain:A ((310-380)) | -NTGNWGPLLLEVESWIIGGVVAGVAISLFGAVLSFLPISGLAVTALGVIGIM-TISYL-SSFIDANRVSNINN--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1A87.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -38994 for 353 contacts (-110.5/contact) +
2D Compatibility (PS) -7014 + (NN) -668 + (LL) 12568
1D Compatibility (HY) -4800 + (ID) 700
Total energy: -39608.0 ( -112.20 by residue)
QMean score : 0.219
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