Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFKGIITNIGTIINTTIRSNSDQIFHIK-AQNLSSIHEGDSIACSGVCLTVVDIIND-----IFTVQISQETMKVSNLGAWKVGKKINLEQAMRLSDKIDGHLVHGHVDETAKILTINQNLGSHEIKLSCPQELIKFVAKKGSVTLDGVSLTVNSVIGREFTVNIIPYTWQNTTFQYNKVNDYLNLEVDMIARYLDQLIQYKYN
4GQN Chain:C ((1-200))
MFTGIITDIGKV-DRVKPLNEGVLLRIETAYDPETIELGASIACSGVCLTVVALPEKGSNARWFEVEAWEEALRLTTISSWQSGRKINLERSLKLGDEMGGHLVFGHVDGQAEIVERKDEGDAVRFTLRAPEELAPFIAQKGSVALDGTSLTVNGVNANEFDVLLIRHSLEVTTWGERKAGDKVNIEIDQLARYAARLAQY---
General information:
TITO was launched using:
RESULT:
Template:
4GQN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112999 for 1512 contacts (-74.7/contact) +
2D Compatibility (PS) -20768 + (NN) 1314 + (LL) 280
1D Compatibility (HY) -16000 + (ID) 4150
Total energy: -152323.0 ( -100.74 by residue)
QMean score : 0.394
(partial model without unconserved sides chains):
PDB file :
Tito_4GQN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GQN-query.scw
PDB file :
Tito_Scwrl_4GQN.pdb
: