Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDNLVCMGIITSPHGIKGAVKVKIFTEKPENISLYGKLISG----SKNYDIDSVSVIGENLVIATINGVNSRNEAEFLRNKKLYVERNKLLKLNDENEFYQSDLVNMEIRLENDELYGYIKSIYNFGSGDI-LEISVIS--TKKNIMLPFTKEIFPYVNIKERY-ITLNMPEFIG
2F1L Chain:A ((19-187))
---DLVVIGKIVSVYGIRGEVKVYSFTDPLDNLLDYRRWTLRRDGEIRQAELVRGRLHG-KVLAAKLKGLDDREEARTFTGYEICIPRSEL------PSYYWHQLEGLKVIDQGRQLLGVIDHLLETGANDVMVVKPCAGSLDDRERLLPYTGQCVLSIDLAAGEMRVDWDADF--
General information:
TITO was launched using:
RESULT:
Template:
2F1L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -62301 for 1091 contacts (-57.1/contact) +
2D Compatibility (PS) -16802 + (NN) -1207 + (LL) 696
1D Compatibility (HY) -10000 + (ID) 1700
Total energy: -91314.0 ( -83.70 by residue)
QMean score : 0.453
(partial model without unconserved sides chains):
PDB file :
Tito_2F1L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2F1L-query.scw
PDB file :
Tito_Scwrl_2F1L.pdb
: