Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNSVIEITSIKRRFCAYLIDMAVLLIPNLLIIILLKNFPLILDLLYMCVNCSYFTYFISSAAQATPGQQLMNIHTISLDGSKINLSLAFDRSISQFFLHLLNNVIAILIELFQEQNELVSALIILGVIMLLLTICWYLVACFSQEKQTYHDMLFDTIVVKGAIK
2QFA Chain:C ((3-47))
----------------------------------------------------------------------------TTAPGPIHLLELCDQKLMEFLCNMDNKDLVWLEEIQEEAERMFTR-------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2QFA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -8319 for 176 contacts (-47.3/contact) +
2D Compatibility (PS) -5016 + (NN) -3138 + (LL) 12368
1D Compatibility (HY) -3200 + (ID) 400
Total energy: -7705.0 ( -43.78 by residue)
QMean score : 0.181
(partial model without unconserved sides chains):
PDB file :
Tito_2QFA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QFA-query.scw
PDB file :
Tito_Scwrl_2QFA.pdb
: