Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKSFCVKAPAKINLFLHVVEKKETGYHLIEGLFVFANLSNFLEIKVGEKDFRYDNPIVEFVNSELKIS-NKYNTVMRAVNLLLRHAPVRTKVTVKVVKNIPTSAGLGSGSSDAGAVIRTLGKLWKID--RPILNEIALSVGADVPASIDSKPVLVRGIGEELCYINKFSLPTNIVLAKPKKKFLSTPEVFSKYGGNFSK--------PIEWR-DDTEKDLLKLLKETENDLQEIAISLVPEIRDVILALESQEGSILSRMSGSGVTCFGIFDSEENAKTAAVNIREKQPEWWVCDAQLIV |
3PYF Chain:A ((5-282)) | --SVTVRVPGKVNLYLAVGDRREDGYHELTTVFHAVSLVDEVTVRNADVL-S----LELVGEGADQLPTDERNLAWQAAELMAEHVGRAPDVSIMIDKSIPVAGGMAGGSADAAAVLVAMNSLWELNVPRRDLRMLAARLGSDVPFALHGGTALGTGRGEELATVLSRN-TFHWVLAFA-DSGLLTSAVYNELDRLREVGDPPRLGEPGPVLAALAAGDPDQLAPLLGNEMQAAAVSLDPALARALRAGVE-AGALAGIVSGSGPTCAFLCTSASSAIDVGAQLSGAGVCRTVRVATGPV |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3PYF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -110860 for 2260 contacts (-49.1/contact) +
2D Compatibility (PS) -28605 + (NN) -2477 + (LL) 560
1D Compatibility (HY) -8000 + (ID) 3450
Total energy: -152832.0 ( -67.62 by residue)
QMean score : 0.352
|
|
|