Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGIKIAPSILSANFAKLGEEVKRINNLGVDYIHIDVMDGNFVPNITIGPGVISTIRKYTNLFFDVHLMIKSPGDHVESFINAGADIITIHAE--AEVHLERLIRKIKSYKNVNDAKKKVQVGVSIVPSTSPGIFEYIIHELDIVLIMTVNPGFGGQEFIYSQLGKISVVKKMIRERGLKTQISVDGGVSLSNAADIIKAGADILVAGSAIFRAKNMKKAVNDFKNLSL
1RPX Chain:C ((11-225))
--IIVSPSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNITIGPLVVDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSL--------GAKAGVVLNPGTPLTAIEYVLDAVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAPDYAEAIKGIKTSKR
General information:
TITO was launched using:
RESULT:
Template:
1RPX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -205552 for 1822 contacts (-112.8/contact) +
2D Compatibility (PS) -23013 + (NN) -9090 + (LL) 328
1D Compatibility (HY) -24800 + (ID) 5750
Total energy: -267877.0 ( -147.02 by residue)
QMean score : 0.534
(partial model without unconserved sides chains):
PDB file :
Tito_1RPX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RPX-query.scw
PDB file :
Tito_Scwrl_1RPX.pdb
: