Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MFEWNTNNIIDATGGRGKS-GCHNLNISTDTRNIKKGDLFIALKGKNFDGHDFLHEAFLKGAAAAVVSEDKYRNLPVIVVQDTLKALHDMASYYIRNVLVNAEVIAITGSVGKTTTKDMLHTVLSQ-YGVSHVNDGNLNNNIGLPLTILKAPENCRYLILEMGMNKAGEIKELSKISNPNIAVITNIEPVHVENFSSLFDIAQAKLEILYG-VKNNGTLILNKDNKYYDYLLSHVDRDV-VSFGRSE-SATVCLLNVIKNDKGLNLKIRLNNNQIMNCNLCVQGKHFVYSVLAVVAVIQNLGLNLSKLPLALENFNITKGRGSVHKAKYNGKCIHLIDDSYNASPASMKAAIRTLGIYSNRRKVALLGDMLELGNKSITFHMKLLDSIVKYDVDKVYTVGKFMLKLHRLLPGNIKGTHFNDSNQLKSNLANIV--QNNDVVLVKGSRGVKMDFIVQGFIIEY |
1GG4 Chain:A ((1-447)) | MISVTLSQLTDILNGELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDIDLPQLIVKDTRLAFGELAAWVRQ--QVPARVVALTGSSGKTSVKEMTAAILSQCG-NTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLA--------SLAGVAKAKGEIFSGLP-ENGIAIMNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTG-SVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQL---AENQLLLDDSYNANVGSMTAAVQVLAEMP-GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTASG---VGEHFADKTALITRLKLLIAEQQVITILVKGSRSAAMEEVVRALQ--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GG4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 12005 for 3604 contacts (3.3/contact) +
2D Compatibility (PS) -42790 + (NN) 10755 + (LL) 752
1D Compatibility (HY) 24400 + (ID) 1200
Total energy: 3922.0 ( 1.09 by residue)
QMean score : 0.062
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