Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIGNLSGTVDEVYGDHIILNVNDVGYIIYLSAKALNVCY-IGSKIKLLIETCANNRENTTQLYGFINKEEQSCLRLLVKVSGVSYKTAMSILSKLTPEQLFLAIMNEDKIAL-KISGLGPKLINRIITELSGKVSKLETNNN--NFYPINEDAVSALINLGYEKTKVYDTIKKYK-PNLDTKDIIRTALKELSNYEIDIMQ
1CUK Chain:A ((1-203))
MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVR--EDAQLLYGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEMKDRFKGLHGDLFTP-TDDAEQEAVARLVALGYKPQEASRMVSKIARPDASSETLIREALRAAL--------
General information:
TITO was launched using:
RESULT:
Template:
1CUK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -127148 for 1384 contacts (-91.9/contact) +
2D Compatibility (PS) -19862 + (NN) -3174 + (LL) 716
1D Compatibility (HY) -10000 + (ID) 2650
Total energy: -162118.0 ( -117.14 by residue)
QMean score : 0.509
(partial model without unconserved sides chains):
PDB file :
Tito_1CUK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1CUK-query.scw
PDB file :
Tito_Scwrl_1CUK.pdb
: