Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSLINPKVSAMFFDQIVTATDHNIAWEKIQNLLYNLYGEATYNSWLSSLKFVSSSNGEVLLSVPTRFIKEWITVHYMEKILLLWQNEDKSICSIDIQVTEEKNSSSSIISKNKEESVNNLGSPLDPRFTFDNFVVGKPNELAFTAAKRVAESIDPIPGS-NPLFLYGGVGLGKTHLMHAIAWHIV-NSPSAKRKVVYLSAEKFMYQYITALRSKDIMLFKEQFRS-VDVLMVDDVQFISGKDSTQEEFFHTFNALIDQNKQLVISADRSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQAKVEQMNMYVPQDVLEFLARNIRSNIRELEGALNK-VAHTSLIGRSMTVESASETLMDLLRSNHRSITIAEIQKKIAEFFNIKVTDMHSNRRLRSLVRPRQIAMYFAKKFTHKSLPDIGRSFGGRDHATVIHAVKQIENFIKTDSEFADEINQLRKMFK |
2Z4R Chain:C ((96-335)) | -------------------------------------------------------------------------------------------------------------------------TPLNPDYTFENFVVGPGNSFAYHAALEVAKH----PGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLR--VMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKDFIKP------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2Z4R.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -145916 for 1876 contacts (-77.8/contact) +
2D Compatibility (PS) -26693 + (NN) -19750 + (LL) 17140
1D Compatibility (HY) -22800 + (ID) 4950
Total energy: -202969.0 ( -108.19 by residue)
QMean score : 0.599
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