Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNKKLTENKKPLVDKEDKKTPPVKGFTKKNKSRRDFITLTTCAMASIGTVSGLWPLIKSMNPSAEVLAMSTVEVNLSGIQEGHGIKVKWQGKPVFIRRRTKQEIKAARVVNVEDLRDPQSDEQRVHKGKD-EWLIMVGVCTHLGCVPVEHATKDGNGWFCPCHGSYYDTSGRVIGGPAPKNMVVPDYFFPNENVVVIGKKA |
3CXH Chain:P ((21-184)) | ----------------------------KGRSYAYFMVGAMGLLSSAGAKSTVETFISSMTATADVLAMAKVEVNLAAIPLGKNVVVKWQGKPVFIRHRTPHEIQEANSVDMSALKDPQTDADRV---KDPQWLIMLGICTHLGCVPIGEA-GDFGGWFCPCHGSHYDISGRIRKGPAPLNLEIPAYEFDGDKVIVG---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3CXH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -40385 for 1066 contacts (-37.9/contact) +
2D Compatibility (PS) -17096 + (NN) 76 + (LL) 1260
1D Compatibility (HY) -15600 + (ID) 4300
Total energy: -76045.0 ( -71.34 by residue)
QMean score : 0.413
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