Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKFLLKPKKSLGQNFILSSEITKRIVVLAGNLEDFNVIEIGPGYGALTKEILAHNPKSLLAIEKDSNL---VKCHDQLLNEHQGKFRIVEADALYVVEEELIER---PVKVIANLPYNISLALFLKWLNKIKLFTTFTLMFQKEVADRIIARPNSKDYGSLSVLSQLLCDIRREFDIEPKEFFPRPKVYSSVITVKPLPTQRFAV-NLEALTKLTRAVFAQRRKMLRNSLQNVTNRTETALENAKLSGNERPKNLTVEQFCLLANNM
3TPZ Chain:B ((12-262))
--------RKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT-EPVGERLDQLTVIELDRDLAARLQTHPFL----GPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNPPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLF--SVEVLTGMGIDPAMRAENISVAQYCQMANYL
General information:
TITO was launched using:
RESULT:
Template:
3TPZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -165520 for 1952 contacts (-84.8/contact) +
2D Compatibility (PS) -26100 + (NN) -15519 + (LL) 1072
1D Compatibility (HY) -19600 + (ID) 4400
Total energy: -230067.0 ( -117.86 by residue)
QMean score : 0.464
(partial model without unconserved sides chains):
PDB file :
Tito_3TPZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TPZ-query.scw
PDB file :
Tito_Scwrl_3TPZ.pdb
: