Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--MEKYIVFVLSY----ILGSIPFSLVITKIKGINLREVGSGNIGATNVARTGSKCIAALALLLDSLKGFIAVYIAKQFFDDGSFHMYASAILVVLGHMFPVWLKFSGGKGVATTLGILIALNISLVLAFVFVWLAVFFAFRYSSLASLTSTIAAVLSSFFFQRDLFFTLLTVAILIFFKHYRNIVNLLQGRERKFS
4B9G Chain:A ((16-161))
DIDSAVRIIPVNYDSDPKLNSQLYTVEMTIPAG-----VSAVKIVPTDSLTSSGQQIGKLVNVNNP-DQNMNYYIRKDS-GAGKF--------------------MAGQKG-----------SFSVKENTSYTFSAIYTGGEYPNSGYSSGTYAGHLTVSFYSNDN-------------KQRTEIATKNFPVSTTIS
General information:
TITO was launched using:
RESULT:
Template:
4B9G.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -90851 for 1029 contacts (-88.3/contact) +
2D Compatibility (PS) -15319 + (NN) 229 + (LL) 6268
1D Compatibility (HY) -1200 + (ID) 1450
Total energy: -102323.0 ( -99.44 by residue)
QMean score : -0.004
(partial model without unconserved sides chains):
PDB file :
Tito_4B9G.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4B9G-query.scw
PDB file :
Tito_Scwrl_4B9G.pdb
: