Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMIFRLLFLLVFISVNSYAVIKQDLSNNHYIQKINEITSKELLLPLPDDKLLGDSKAPILMIEYASLTCYHCSLFHREVFPEIKKKYIDTGKMLYIFRHFPLDYRGLKAAMLSYCYEKQEDYFNFNKAVFNSIDSWNYSNLSDLTVLQKVAALSNLKQDTFNRCINDKEVMDKIINDKSLAI-NKLGIMATPIFFIKLNNDRSHTEPNKIRHEGYKAQEYFTNVIDRLYEKAIVK
3F4S Chain:A ((20-216))
-------------------------------------TSNELLLPLPNDKLLGDPKAPILMIEYASLTCYHCSLFHRNVFPKIKEKYIDTGKMLYIFRHFPLDYRGLKAAMLSHCYEKQEDYFNFNKAVFNSIDSWNYYNLSDLTLLQRIAALSNLKQDAFNQCINDKKIMDKIVND-KSLAINKLGITAVPIFFIKLNDDKSYIEHNKVKHGGYKELKYFTNVIDKLYGKAIVK
General information:
TITO was launched using:
RESULT:
Template:
3F4S.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -139932 for 1493 contacts (-93.7/contact) +
2D Compatibility (PS) -20869 + (NN) -10012 + (LL) 4020
1D Compatibility (HY) -28000 + (ID) 8050
Total energy: -202843.0 ( -135.86 by residue)
QMean score : 0.702
(partial model without unconserved sides chains):
PDB file :
Tito_3F4S.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3F4S-query.scw
PDB file :
Tito_Scwrl_3F4S.pdb
: