Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQLEKIQSDVEDIWKNRSKLSNRSVKRAARVIIKKVIKLLDSGKIRVAERLSDGKWIVHTWIKQAISLYFLTEESKMIDHTGW--WFDKVNNKFDGWNEEEFHQSKIRAVPGCFVRQSAYVGTNVVLMPSFINVGAYISSGTMIDTWSTIGSCAQIGKNCHVSGGVGIGGVLEPIQASPVIIEDNCFIGARSEVAEGVIIREGSVLGMGVFIGASTKIIDRETNKVFYGEVPPYSVVVPGSTLSANNI-SIYCAIIVKKVDEKTRQKTSINEILRD
3TK8 Chain:C ((44-300))
---QQLQQIIDNAWENRAELSPKAASAEIREAVAHAIEQLDRGALRVAEKI-DGAWTVHQWLKKAVLLSFRLEDNAPMPAGGYSQFYDKVPSKFANYTAEDFAAGGFRVVPPAIARRGSFIAKNVVLMPSYTNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGVIVEENSVISMGVYLGQSTKIYDRETGEVTYGRIPAGSVVVAGNLPAKDGTHSLYCAVIVKKVD---------------
General information:
TITO was launched using:
RESULT:
Template:
3TK8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -230501 for 2036 contacts (-113.2/contact) +
2D Compatibility (PS) -28250 + (NN) -14673 + (LL) 1636
1D Compatibility (HY) -26000 + (ID) 6700
Total energy: -304488.0 ( -149.55 by residue)
QMean score : 0.643
(partial model without unconserved sides chains):
PDB file :
Tito_3TK8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TK8-query.scw
PDB file :
Tito_Scwrl_3TK8.pdb
: