Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMIRITFLAKQKVEEYSSRVTGFDILQPDISKEAIALRVNGELYDLSREIESDTEIDVIQLNDEEGLDIIRHDAAHIMAQAVKELFPNAQVTIGPTIQDGFYYDFAIDHTFTTDDLAAIEKKMKEIIKSNHRFIREVWARKQAINFFSSIGEKYKVDIISSIPESEDLTVYRQGDFVDLCRGPHSPSTSRVKAFKLMKVAGAYWRGNVKGPMLQRIYGTAWRNKDELNIYLKRLEEAKKRDHRRIAKDMDLF-HIQEEAVGQVFWHEQGYTLYNVLESYIRKKLINNGYAEVKTPILVSKELWEKSGHWDKFRENMFI---VDESESKKLAIKPMNCPCHVQIFNSYTRSYRNLPIRMAEFGMCHRNESSGSLHGLMRVRGFTQDDAHIFCMEEQVNSETVKFCALLKEVYSELGFNEISVKFSDR-PNVRA---GDNEVWDRAEKALLEAVKEAGLSYELNPGEGAFYGPKLEFILKDAIGRSWQCGTLQVDFILPERLGAFYIGADGQKYHPVMLHRAILGTFERFIGILIEHYAGKFPLWLAPTQLVILTVTNEAD-NYATEISNVLKEQGVRVKTDLTNEKVSYKIRLHSSNKVPILWIVGKNEVASKTVSVRNLGSEKQESSSCEKAVKLLLKKVLI
1NYR Chain:B ((29-625))------------------------ISPGLRKKAVAGKFNGQLVDLTKPLETDGSIEIVTPGSEEALEVLRHSTAHLMAHAIKRLYGNVKFGVGPVIEGGFYYDFDIDQNISSDDFEQIEKTMKQIVNENMKIERKVVSRDEAKEL----------ELIDAIPEDENVTLYSQGDFTDLCRGVHVPSTAKIKEFKLLSTAGAYWRGDSNNKMLQRIYGTAFFDKKELKAHLQMLEERKERDHRKIGKELELFTNSQLVGAGLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQLDETES--MVLRPMNCPHHMMIYANKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNMIIDVYKDFGFEDYSFRLSYRDPEDKEKYFDDDDMWNKAENMLKEAADELGLSYEEAIGEAAFYGPKLDVQVKTAMGKEETLSTAQLDFLLPERFDLTYIGQDGEHHRPVVIHRGVVSTMERFVAFLTEETKGAFPTWLAPKQVQIIPVNVDLHYDYARQLQDELKSQGVRVSIDDRNEKMGYKIREAQMQKIPYQIVVGDKEVENNQVNVRQYGSQDQETVEKDEFIWNLVDEIRL


General information:
TITO was launched using:
RESULT:

Template: 1NYR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -264834 for 4493 contacts (-58.9/contact) +
2D Compatibility (PS) -62014 + (NN) -16139 + (LL) 3088
1D Compatibility (HY) -50400 + (ID) 13200
Total energy: -403499.0 ( -89.81 by residue)
QMean score : 0.488

(partial model without unconserved sides chains):
PDB file : Tito_1NYR.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1NYR-query.scw
PDB file : Tito_Scwrl_1NYR.pdb: