Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKFVRLLSSILVALSVIFLGYCYFTKKGIFAPAVIHNAEVKIGGDFSLINQDGQVIRSNDFKDKYMMIFFGFSSCKKICPMNLGIISETLAKLDEKTSDKLQTFFITVDPECDSTEKLKEFQQQFDYRIQMLTGERKKIDEVIANYKVYTSKVGGEEG---INHSSIIYLIGPGGKYVTHFAADLNSDESQSDKIAAEIKKYINEL
4TXO Chain:B ((20-175))
------------------------------------------IGGPFQLTDQNGKAVTDKSLKGKPTLIFFGYTHSPDVCPTSLFEISEVLRAMG-KDADKVNAIFISVDPERDTPATMKNYLSSFDPHLEGLSGDPAEIAKVITSYRVYAKKVPTKDGDYTMDHTALIYLMDRDGRFVSPFNLKRTPEEA-----AADLKRYL---
General information:
TITO was launched using:
RESULT:
Template:
4TXO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -72578 for 1167 contacts (-62.2/contact) +
2D Compatibility (PS) -16825 + (NN) -10875 + (LL) 4908
1D Compatibility (HY) -13600 + (ID) 2800
Total energy: -111770.0 ( -95.78 by residue)
QMean score : 0.594
(partial model without unconserved sides chains):
PDB file :
Tito_4TXO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4TXO-query.scw
PDB file :
Tito_Scwrl_4TXO.pdb
: