Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTHFVTDKCIKCKYTDCVEVCPVDCFYEGKNMLVINPDECIDCGVCIPECPVDAIVTDDSIKDILELDEELLSNEQKTFKSFYNINIEYSQKWPNITAKKQPLHTAEKYKEKKDKTAYFNENLE
1GAO Chain:D ((4-104))
----VTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCASCEPECPAQAIFSEDEVP--------------EDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQHLER---
General information:
TITO was launched using:
RESULT:
Template:
1GAO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55156 for 742 contacts (-74.3/contact) +
2D Compatibility (PS) -10312 + (NN) -4111 + (LL) 1564
1D Compatibility (HY) -12000 + (ID) 2950
Total energy: -82965.0 ( -111.81 by residue)
QMean score : 0.540
(partial model without unconserved sides chains):
PDB file :
Tito_1GAO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GAO-query.scw
PDB file :
Tito_Scwrl_1GAO.pdb
: