Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNIHSDSPRQCLEEIIKSASAKFNESIDIAVNLGIDSRKSEEQVRGTVVLPKGIGKDIKVAVFTQGKHLLEAEKAGANIVGGEDLVQEIKKGKKLDVDWCITTPDFIAKI-TPIAKILGAKGLMPNPKFGTMTSNVAEAIKTIKSGQIKFRTDKNGIIHGKLGNIKFSVDDLLKNLKAFLKVIKSNKPISVKGVYFKSVFLNSTMGKAYKMSKVEDII
4QGB Chain:B ((21-206))
------------------ATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILDGW-MDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTMVPSVRINPHS---
General information:
TITO was launched using:
RESULT:
Template:
4QGB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99163 for 1475 contacts (-67.2/contact) +
2D Compatibility (PS) -20665 + (NN) -15464 + (LL) 1308
1D Compatibility (HY) -14400 + (ID) 4000
Total energy: -152384.0 ( -103.31 by residue)
QMean score : 0.428
(partial model without unconserved sides chains):
PDB file :
Tito_4QGB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QGB-query.scw
PDB file :
Tito_Scwrl_4QGB.pdb
: