Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSLRKNLITSESVAAGHPDKVADQISDAVLDEYLLTDPFSRTAIETLVTKDNVIIAGEVFGPNVANSTIENVVRNTIKDIGYEHD--GFHWGEVGVNMLLHEQSNDIAIGVD------QGAGDQGIMYGYATIETKSLMPAPIFYAHSILKNVMSVVKEAKLG---PDAKSQITLAYESNLPVRAESIIVSIQHPEDLDQLKVKEIIYPYVVSS-LPKGWMCAEENFFVNPTGRFVIGGPVSDCGLTGRKIMVDTYGGYIPHGGGAFSGKDATKVDRSAAYMARYLAKNIVFANLAERCLVQLSYAIGVSKPTSFYIDTFGTNKVDEERIKKLIESNIDLSTRGIIKHLSLSRPIYKRTACYGHFGKESEEDDGFSWENLNLSLDLSREFSVQSNRKVSLDC |
| 1RG9 Chain:D ((2-371)) | ----KHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEI--TTSAWVDIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPDINQGVDRADPLEQGAGDQGLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTLPWLRPDAKSQVTFQYDDGKIVGIDAVVLSTQHSEEIDQKSLQEAVMEEIIKPILPAEWLTSATKFFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSIMVETFGTEKVPSEQLTLLVREFFDLRPYGLIQMLDLLHPIYKETAAYGHFGREH-----FPWEKTDKAQLLRDAAGLK--------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1RG9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -171210 for 3170 contacts (-54.0/contact) +
2D Compatibility (PS) -38057 + (NN) -12667 + (LL) 1032
1D Compatibility (HY) -31200 + (ID) 9800
Total energy: -261902.0 ( -82.62 by residue)
QMean score : 0.475
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