Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLPATPDNSTAVAIIPIAAILGIIPIATS---VAPIAPNNN--AKPIVHPPEKVLEGCCFCEEIMLV----YYKTVARCFVFCAN---YYYFHHLQTFFEMELYYL-
1D2Z Chain:A ((7-108))
-----LDNTMAIRLLPLPVRAQLCAHLDALDVWQQLATAVKLYPDQVEQISSQKQRGRSASNEFLNIWGGQYNHTVQTLFALFKKLKLHNAMRLIKDYVSEDLHKYI
General information:
TITO was launched using:
RESULT:
Template:
1D2Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -84377 for 582 contacts (-145.0/contact) +
2D Compatibility (PS) -8820 + (NN) 3496 + (LL) 440
1D Compatibility (HY) -2000 + (ID) 600
Total energy: -91861.0 ( -157.84 by residue)
QMean score : 0.279
(partial model without unconserved sides chains):
PDB file :
Tito_1D2Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1D2Z-query.scw
PDB file :
Tito_Scwrl_1D2Z.pdb
: