Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MYQYYNRIFNILLIIVLLLSNVTYADASESMHQIGSDIVVGLLKTEKETYPHELGLFQSIYEMFNSFGVRTVFIDCNKIINLKKIQEELLSLLKQDEMLAKKLILDRIKIEIGQFIKGHKINRIFIPENYYNLHSEPFPPTPCCQLVTEAIVKIVDDNPTIHLLSICGGLQGIMSAKGIEVVHVENFVSDEEQRRSHLKSAPNPQQEDVTFQQIKIVPNSHLAKVVAKFLLPDKNGWFSTCFPDAHSGTVNNRPENRRKLELLGYKIAAFSNDGVIEAIEDK-HGNIYFQSHPEALVVKSDKNLHLSNHKARQVSTLVAMAIINDFLYRA |
| 1GPM Chain:A ((4-193)) | ---------------------------------NIHKHRILILDFGS-Q------YTQLVARRVRELGVYCELWAWDVTE--------------------------------AQ-IRDFNPSGIILSGGPESTTE-EN---------SPRAPQYVFEA-GVPVFGVCYGMQTMAMQLGGHVEA--S-NE--------R---------EFGYAQVEVVNDSALVRGIEDALTA--DGKPLLDVWMSHGDKVTAI--------PSDFITVASTESCPFAIMANEEKRFYGVQFHPEVTHTRQGMRMLERFVRDICQCEALWTPAKIIDDAVA |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GPM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -84634 for 1578 contacts (-53.6/contact) +
2D Compatibility (PS) -20181 + (NN) -4969 + (LL) 9096
1D Compatibility (HY) -2000 + (ID) 1300
Total energy: -103988.0 ( -65.90 by residue)
QMean score : 0.324
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