Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEKFNNWILNAISGSQTDKNETTEELKGAKFIILYAYSMLVLLALVISNIFIHILEPKLSITTQIIIVLILIEALIGLRFLKAYDVKRGKDKENKKNSKDFVKLKSILVAILFTSLALTAGTVADIYGFTDLGNTRSDLIVWSIGGIIFGLVCYTMEDKK
1ZMP Chain:D ((1-31))
--------------------------------------------------------------------------------------------------------------------------------ATCYCRTGRLSGVCEISGRLYRLCC-------
General information:
TITO was launched using:
RESULT:
Template:
1ZMP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9908 for 113 contacts (-87.7/contact) +
2D Compatibility (PS) -2833 + (NN) -2957 + (LL) 12228
1D Compatibility (HY) -2000 + (ID) 350
Total energy: -5820.0 ( -51.50 by residue)
QMean score : -0.073
(partial model without unconserved sides chains):
PDB file :
Tito_1ZMP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZMP-query.scw
PDB file :
Tito_Scwrl_1ZMP.pdb
: