Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MEKLKLMTIVGTRPEIIRLSSTIKACDQY--FNQILVHTGQNYDYTLNQIFFDDLELRQPDHYLEAVG--SNLGETMGNIIAKTYDVLLREQPDALLILGDTNSCLA-AVSAKRLKIPVFHMEAGNRCFDQ--NVPEEINRKIVDHVSDVNLPYTEHSRRYLLDEGFNKANIFVTGSPMTEVIEAHRDKINHSDVLNKLGLEPQQYILVSAHREENIDNEKNFKSLMNAINDIAKKY-KMPVIYSTHPR-SWK--KIEESKFEFDPLVKQLKPFGFFDYNALQKDAFVVLSDSGTLSEESSILKFPGVLIRTSTERPEVLDKGTVIVGGITYNNLIQSVELAREMQNN-NEPMIDAIDYKDTNVSTKVVKIIQSYKDIINR-NTWRK |
| 1V4V Chain:A ((4-374)) | -GMKRVVLAFGTRPEATKMAPVYLALRGIPGLKPLVLLTGQHREQL-RQ-ALSLFGIQ-EDRNLDVMQERQALPDLAARILPQAARALKEMGADYVLVHGDTLTTFAVAWAAFLEGIPVGHVEAGLRSGNLKEPFPEEANRRLTDVLTDLDFAPTPLAKANLLKEGKREEGILVTGQTGVDAVLLAAKLG---R--LPEGLPEGPYVTVTMHRREN---WPLLSDLAQALKRVAEAFPHLTFVY-PVHLNPVVREAVF-PVLKGVRNFVLLDPLEYGSMAALMRASLLLVTDSGGLQEEGAALGVPVVVLRNVTERPEGLKAGILKLAGTDPEGVYRVVKGLLENPEELSRMRKAKNPYGDGKAGLMVARGVAWRLGLGPRPEDW-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1V4V.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -134837 for 3113 contacts (-43.3/contact) +
2D Compatibility (PS) -38266 + (NN) -12526 + (LL) 1300
1D Compatibility (HY) -14000 + (ID) 4400
Total energy: -202729.0 ( -65.12 by residue)
QMean score : 0.423
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