Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNGKKANTINRYKYFHHVNHQKIQQSSKKTLWASLIITLLFTVIEFVGGLVSNSLALLSDSFHMLSDVLALGLSMLAIYFASKKPTARYTFGYLRFEILVA-FLNGLALIVISIWI---LYEAIVRIIYPQPIESGIMFMIASIGLLVNII--LTIILVRSLKQEDNINIQSALWHFMGDLLNSIGVIVAVVLIYFTGWRIIDP---IISIVISLIILRGG-YKITRNAWLILMESVPQHLDTDQIMADIKNIDGILD-VHEFHLWSITTEHYSLSAHVVLDK--KYEGDDYQAIDQVSSLLKEKYGIAHSTLQIENLQLNPLDEPYFDKLT------------------------------------------ |
1W3B Chain:B ((1-388)) | --GPMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ-NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE-IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD |
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General information:
TITO was launched using:
| RESULT:
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Template: 1W3B.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -214733 for 2482 contacts (-86.5/contact) +
2D Compatibility (PS) -33014 + (NN) -12817 + (LL) 664
1D Compatibility (HY) 4000 + (ID) 2400
Total energy: -258300.0 ( -104.07 by residue)
QMean score : 0.276
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