Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIKVGIVGGSGYGAIELIRLLQTHP-----HVTIAHIYSHSKVDEPLKLTFPHL----QHIMQHFEALTVDNNDCDVIFFATPAPVSKTCIPPLVEKGIHVIDLSGAFRIKNREIYEAYYKETAAAQDDLNHAIYSISEWQSFDN--NGTKLISNPGCFPTATLLALHPLISEKIVDLSSIIIDAKTGVSGAGRSLSQRVHFSEMNENLSAYAI-GNHKHKPEIEQYLSIIAGQDVSVIFTPHLVPMTRGILSTIYVKFSSEYTTESLHKLMTSY---YANQPFVRIRDIGTFPTTKEVLGSNYCDIGIYVDETTQTAILVSVIDNLVKGASGQAIQNLNILYDFEVTTGLNQSPVYP |
| 2I3G Chain:B ((11-352)) | --KVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEPTEAAVLGGHDA--VFLALPHGHSAVLAQQLSPETL-IIDCGADFRLTDAAVWERFYGSSHAGSWP-----YGLPELPGARDQLRGTRRIAVPGCYPTAALLALFPALAADLIE-PAVTVVAVSGTSGAGRAATTDLLGAEVIGSARAYNIAGVHRHTPEIAQGLRAVTDRDVSVSFTPVLIPASRGILATCTAR-----TRSPLSQLRAAYEKAYHAEPFIYLMPEGQLPRTGAVIGSNAAHIAVAVDEDAQTFVAIAAIDNLVKGTAGAAVQSMNLALGWPETDGLSVVGVAP |
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General information:
TITO was launched using:
| RESULT:
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Template: 2I3G.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -210648 for 2863 contacts (-73.6/contact) +
2D Compatibility (PS) -35412 + (NN) -8106 + (LL) 1508
1D Compatibility (HY) -19200 + (ID) 5850
Total energy: -277708.0 ( -97.00 by residue)
QMean score : 0.460
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