Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKRPKRILATIIIFLSLLFTIIYIDDIQKWFNQYTDKLTQNHKGQGHSKWEDFFRGSRITETFGKYQHSPFDGKHYGIDFALPKGTPIKAPTNGKVTRI-FNNELGGKVLQIAEDNGEYHQWYLHLDKYNVKVGDRVKAGDIIAYSGNTGKQTTGAHLHFQRMKGGVGNAYAEDPKPFIEQLPDGERSLYDL
4LXC Chain:D ((21-138))
---------------------------------------------------------------YGPYPLGINGGMHYGVDFFMNIGTPVKAISSGKIVEAGWSNYGGGNQIGLIENDGVHRQWYMHLSKYNVKVGDYVKAGQIIGWSGSTG-YSTAPHLHFQRMVNSFSNSTAQDPMPFLKS-----------
General information:
TITO was launched using:
RESULT:
Template:
4LXC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28499 for 859 contacts (-33.2/contact) +
2D Compatibility (PS) -12607 + (NN) -9499 + (LL) 5340
1D Compatibility (HY) -8800 + (ID) 2850
Total energy: -56915.0 ( -66.26 by residue)
QMean score : 0.508
(partial model without unconserved sides chains):
PDB file :
Tito_4LXC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LXC-query.scw
PDB file :
Tito_Scwrl_4LXC.pdb
: