Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKRVITYGTYDLLHYGHIELLRRAREMGDYLIVALSTDEFNQIKHKKSYYDYEQRKMMLESIRYVDLVIPEKGWGQKEDDVEKFDVDVFVMGHDWEGEFDFLKDKCEVIYLKRTEGISTTKIKQELYGKDAK
1N1D Chain:D ((1-126))
MKKVITYGTFDLLHWGHIKLLERAKQLGDYLVVAISTDEFNLQKQKKAYHSYEHRKLILETIRYVDEVIPEKNWEQKKQDIIDHNIDVFVMGDDWEGKFDFLKDQCEVVYLPRTEGISTTKIKEEI------
General information:
TITO was launched using:
RESULT:
Template:
1N1D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54715 for 943 contacts (-58.0/contact) +
2D Compatibility (PS) -14156 + (NN) -7200 + (LL) 116
1D Compatibility (HY) -17200 + (ID) 4400
Total energy: -97555.0 ( -103.45 by residue)
QMean score : 0.641
(partial model without unconserved sides chains):
PDB file :
Tito_1N1D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N1D-query.scw
PDB file :
Tito_Scwrl_1N1D.pdb
: