Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTHVEVVATIAPQLSIEETLIQKINHRIDAIDVLELRIDQIENVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQGGYGQFINDLYLNLISDLANINGIDMIDIEWQADIDIEKHQRIIKHLQQYNKEVVISHHNFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGGALTYGCIGEPQAPGQIDVTDLKAQVTLY
1SFJ Chain:B ((1-238))
MTHVEVVATITPQLY--ETLIQKINHRIDAIDVLELRIDQFENVTVDQVAEMITKL---QDSFKLLVTYRTKLQGGYGQFTNDSYLNLISDLANINGIDMIDIEWQADIDIEKHQRIITHLQQYNKEVIISHHNFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGGALTYGCIGEPQAPGQIDVTDLKAQVTLY
General information:
TITO was launched using:
RESULT:
Template:
1SFJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -180610 for 1990 contacts (-90.8/contact) +
2D Compatibility (PS) -25417 + (NN) -13935 + (LL) 772
1D Compatibility (HY) -35600 + (ID) 11300
Total energy: -266090.0 ( -133.71 by residue)
QMean score : 0.575
(partial model without unconserved sides chains):
PDB file :
Tito_1SFJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SFJ-query.scw
PDB file :
Tito_Scwrl_1SFJ.pdb
: