Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIRQARPEDRFDIAKLVYMVWDDMELELVKHLPKDMVLDAIEKSCVDATYRTFYQHILVYEVENKVAGCIISYSGENELKYEKAWELLDLP--EEIKQYGTPLPVK-----EAKDDEYYIETIATFAAYRGRGIATKLLTSLLE---SNTHVKWSLNCDINNEAALKLYKKVGFISDGQIELYKHMYHHLIVK
1U6M Chain:D ((3-185))
LIRSATKEDGQAIARLVLVILKDMELPILEEVSEEQMIDLLAEATAYPTYRYGYQRILVYEHAGEVAGIAVGYPAEDE-------KIIDEPLREVFKKHGLAEDVRLFIEEETLPNEWYLDTISVDERFRGMGIGSKLLDALPEVAKASGKQALGLNVDFDNPGARKLYASKGFKDVTTMTISGHLYNHM---
General information:
TITO was launched using:
RESULT:
Template:
1U6M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -90697 for 1237 contacts (-73.3/contact) +
2D Compatibility (PS) -18076 + (NN) -4997 + (LL) 1260
1D Compatibility (HY) -14000 + (ID) 3150
Total energy: -129660.0 ( -104.82 by residue)
QMean score : 0.413
(partial model without unconserved sides chains):
PDB file :
Tito_1U6M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1U6M-query.scw
PDB file :
Tito_Scwrl_1U6M.pdb
: