Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRNTNKFLLIPYLLWMVIFIIVPVVLLIYFSFLDINGHFSFTNYQQIFTT-KYLKMFAYSILYAALITIITLAISYPAAYYITRS-K-FQNILLMIMIIPTWINLLLKTYAFIGLLSHDGVINQFFHLFNLPSFNLLFTTGAFLVVASYIYIPFMILPIFNSMKAIPNNLLQASSDLGASPFYTFRKVIMPLTKEGVMTGIQVTFIPSLSLFMITRLIAGNKVINIGTAIEEQFLTIQNYGMGSTIAIFLIVFMAFILIITKSSNGRG
2ONK Chain:C ((28-275))
----FSALLALLSSIILLFVLLPVAATVTLQLF------NFDEFLKAASDPAVWKVVLTTYYAALISTLIAVIFGTPLAYILARKSFPGKSVVEGIVDLPVVIPHTVAGIALLVVFGSSGLIGSFSP------LKFVDALPGIVVAMLFVSVPIYINQAKEGFASVDVRLEHVARTLGSSPLRVFFTVSLPLSVRHIVAGAIMSWARGISEFGAVVVIAYY-PMIAPTLIYERYL-SEGLSAAMPVAAILILLSLAVFVALRIIVG--
General information:
TITO was launched using:
RESULT:
Template:
2ONK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -270604 for 1838 contacts (-147.2/contact) +
2D Compatibility (PS) -25096 + (NN) -1712 + (LL) 612
1D Compatibility (HY) -19200 + (ID) 2300
Total energy: -318300.0 ( -173.18 by residue)
QMean score : 0.374
(partial model without unconserved sides chains):
PDB file :
Tito_2ONK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ONK-query.scw
PDB file :
Tito_Scwrl_2ONK.pdb
: