Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKEIVIASNNQGKINDFKVIFPDYHVIGISELIPDFDVEETGSTFEENAILKSEAAAKALNKTVIADDSGLEVFALNGEPGIYSARYAGENKSDEANIEKLLNKLGNTTDRRAQFVCVISMSGPDMETKVFKGTVSGEIADGKYGENGFGYDPIFYVPKLDKTMAQLSKEQKGQISHRRNAINLLQAFLEGEKNV
4BNQ Chain:B ((2-194))
-KEIVIASNNQGKINDFKVIFPDYHVIGISELIPDFDVEETGSTFEENAILKSEAAAKALNKTVIADDSGLEVFALNGEPGIYSARYAGENKSDEANIEKLLNKLGNTTDRRAQFVCVISMSGPDMETKVFKGTVSGEIADGKYGENGFGYDPIFYVPKLDKTMAQLSKEQKGQISHRRNAINLLQAFLEGEKN-
General information:
TITO was launched using:
RESULT:
Template:
4BNQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2126 for 1706 contacts (-1.2/contact) +
2D Compatibility (PS) -20889 + (NN) -12255 + (LL) 400
1D Compatibility (HY) -24000 + (ID) 9600
Total energy: -68470.0 ( -40.13 by residue)
QMean score : 0.617
(partial model without unconserved sides chains):
PDB file :
Tito_4BNQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4BNQ-query.scw
PDB file :
Tito_Scwrl_4BNQ.pdb
: