Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIRLGKMSDLDQILNLVEEAKELMKEHDNEQWDDQYPLLEHFEEDIAKDYLYVLEENDKIYGFIVVDQDQAEWYDDIDWPVNREGAFV--IHRLTGSKEY--KGAATELFNYVIDVVKARGAEVILTDTFAL-----NKPAQGLFAKFGFHKVGEQLMEYPPYDKGEPFYAYYKNLKE
1WWZ Chain:B ((53-147))
----------------------------------------------ASDGFFVAKVGDKIVGFIVCDK---------DWFSKYEGRIVGAIHEFVVDKKFQGKGIGRKLLITCLDFLGK------YNDTIELWVGEKNYGAMNLYEKFGFKKVGKS----------------------
General information:
TITO was launched using:
RESULT:
Template:
1WWZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70731 for 525 contacts (-134.7/contact) +
2D Compatibility (PS) -9393 + (NN) -2980 + (LL) 6016
1D Compatibility (HY) -10000 + (ID) 1800
Total energy: -88888.0 ( -169.31 by residue)
QMean score : 0.568
(partial model without unconserved sides chains):
PDB file :
Tito_1WWZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1WWZ-query.scw
PDB file :
Tito_Scwrl_1WWZ.pdb
: