Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANIKSAIKRVKTTEKAEARNISQKSAMRTAVKNAKTAVSNNA-DNKNELVSLAVKLVDKAAQSNLIHSNKADRIKSQLMTANK
2VQE Chain:T ((8-87))
--RNLSALKRHRQSLKRRLRNKAKKSAIKTLSKKAVQLAQEGKAEEALKIMRKAESLIDKAAKGSTLHKNAAARRKSRLMRK--
General information:
TITO was launched using:
RESULT:
Template:
2VQE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7430 for 476 contacts (-15.6/contact) +
2D Compatibility (PS) -8505 + (NN) -2969 + (LL) 336
1D Compatibility (HY) 0 + (ID) 1350
Total energy: -19918.0 ( -41.84 by residue)
QMean score : 0.797
(partial model without unconserved sides chains):
PDB file :
Tito_2VQE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VQE-query.scw
PDB file :
Tito_Scwrl_2VQE.pdb
: