Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVVVQRVKEASVTND-TLNNQIKKGYCLLVGIGQNSTEQDADVIAKKIANARLFEDDNNKLNFNIQQMNGEILSVSQFTLYADVKKGNRPGFSNSKNPDQAVKIYEYFNDALRAYGLTVKTGEFGTHMNVSINNDGPVTIIYESQDGKIQ
1JKE Chain:D ((1-144))
MIALIQRVTRASVTVEGEVTGEIGAGLLVLLGVEKDDDEQKANRLCERVLGYRIFSDAEGKMNLNVQQAGGSVLVVSQFTLAADTERGMRPSFSKGASPDRAEALYDYFVERCRQQEMNTQTGRFAADMQVSLVNDGPVTFWLQ-------
General information:
TITO was launched using:
RESULT:
Template:
1JKE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -69232 for 1111 contacts (-62.3/contact) +
2D Compatibility (PS) -15741 + (NN) -6538 + (LL) 232
1D Compatibility (HY) -12800 + (ID) 2850
Total energy: -106929.0 ( -96.25 by residue)
QMean score : 0.538
(partial model without unconserved sides chains):
PDB file :
Tito_1JKE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JKE-query.scw
PDB file :
Tito_Scwrl_1JKE.pdb
: