Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKNIVIKSMAALAILTSVTGINAAVVEETQQIANAEKNVTQVKDTNNFPYNGVVSFKDATGFVIGKNTIITNKHVSKDYKVGDRITAHPNGDKGNGGIYKIKSISDYPGDEDISVMNIEEQAVERGPKGFNFNENVQAFNFAKDAKVDDKIKVIGYPLPAQNSFKQFESTGTIKRIKDNILNFDAYIEPGNSGSPVLNSNNEVIGVVYGGIGKIGSEYNG-AVYFTPQIKDFIQKHIEQ
4K1T Chain:C ((2-206))
-----------------------------------SENNVTKVKDTNIFPYTGVVAFKSATGFVVGKNTILTNKHVSKNYKVGDRITAHPNSDKGNGGIYSIKKIINYPGKEDVSVIQVEERAIERGPKGFNFNDNVTPFKYAAGAKAGERIKVIGYPHPYKNKYVLYESTGPVMSVEGSSIVYSAHTESGNSGSPVLNSNNELVGIHFASD---DDNRNAYGVYFTPEIKKFIAENIDK
General information:
TITO was launched using:
RESULT:
Template:
4K1T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54492 for 1707 contacts (-31.9/contact) +
2D Compatibility (PS) -22600 + (NN) -14131 + (LL) 3700
1D Compatibility (HY) -18400 + (ID) 6150
Total energy: -112073.0 ( -65.65 by residue)
QMean score : 0.451
(partial model without unconserved sides chains):
PDB file :
Tito_4K1T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4K1T-query.scw
PDB file :
Tito_Scwrl_4K1T.pdb
: