Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVDVAFVCLGNICRSPMAEAIMRQRLKDRNIH-DIKVHSRGTGSWNLGEPPHEGTQKILNKHNIPFDGMISELF--EATDDFDYIVAMDQSNVDNIKSI----NPNLKGQLFKLLEFSNMEESDVPDPYYTNNFEGVYDMVLSSCDNLIDYIVKDANLKEG
4ETM Chain:B ((18-172))
MISVLFVCLGNICRSPMAEAIFRDLAAKKGLEGKIKADSAGIGGWHIGNPPHEGTQEILRREGISFDGMLARQVSEQDLDDFDYIIAMDAENIGSLRSMAGFKNTSHIKRLLDYVEDSDL--ADVPDPYYTGNFEEVCQLIKTGCEQLLASIQKEKQ----
General information:
TITO was launched using:
RESULT:
Template:
4ETM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -97663 for 1258 contacts (-77.6/contact) +
2D Compatibility (PS) -16187 + (NN) -9180 + (LL) 380
1D Compatibility (HY) -16000 + (ID) 3550
Total energy: -142200.0 ( -113.04 by residue)
QMean score : 0.428
(partial model without unconserved sides chains):
PDB file :
Tito_4ETM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4ETM-query.scw
PDB file :
Tito_Scwrl_4ETM.pdb
: