Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MINVTLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENVSGPIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDMIESVLHTEFKVKKTQGNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIG-LKDNGTFIYDGDEPLLKPHVKEVENAKC-ISIGVATDNALVCSVDD-RDTTGISFTINN---KEHYDLPILGKHNMKNATIAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLGTLTGRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKAQHFNSKDDMIEVLTSDL--KAHDRVLVKGSRGMKLEEVVNALIS |
| 1GG4 Chain:A ((1-447)) | MISVTLSQLTDILNGELQ--GADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDID--LP--QLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLA--------SLAGVAKAKGEIFSGLP-ENGIAIMNADNNDWLNWQSVIGS-RKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNANVGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTAS----GVGEHFADKTALITRLKLLIAEQQVITILVKGSRSAAMEEVVRALQ- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GG4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 78465 for 3589 contacts (21.9/contact) +
2D Compatibility (PS) -43541 + (NN) 3170 + (LL) 992
1D Compatibility (HY) 24400 + (ID) 1200
Total energy: 62286.0 ( 17.35 by residue)
QMean score : 0.022
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