Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNQQDVVKELNQQVANWTVAYTKLHNFHWYVKGPNFFSLHVKFEELYNEASQYVDELAERILAVGGNPVGTLTECLEQSIVKEAAKGYSAEQMVEELSQDFTNISKQLENAIEIAGNAGDDVSEDMFIGMQTSVDKHNWMFKSYLS
2D5K Chain:B ((3-148))
-SNQQDVVKELNQQVANWTVAYTKLHNFHWYVKGPNFFSLHVKFEELYNEASQYVDELAERILAVGGNPVGTLTECLEQSIVKEAAKGYSAEQMVEELSQDFTNISKQLENAIEIAGNAGDDVSEDMFIGMQTSVDKHNWMFKSYLS
General information:
TITO was launched using:
RESULT:
Template:
2D5K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41063 for 1142 contacts (-36.0/contact) +
2D Compatibility (PS) -15969 + (NN) -9079 + (LL) 208
1D Compatibility (HY) -20400 + (ID) 7300
Total energy: -93603.0 ( -81.96 by residue)
QMean score : 0.515
(partial model without unconserved sides chains):
PDB file :
Tito_2D5K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2D5K-query.scw
PDB file :
Tito_Scwrl_2D5K.pdb
: