Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRNDLETLKHIIDSSNRITFFTGAGVSVASGVPDFRSMGGLFDEISKDGLSPEYLLSRDYLEDDPEGFINFCHKRLL-FVDTKPNIVHDWIAKLERNQQSLGVITQNIDGLHSDAGSQHVDELHGTLNRFYCNACHKSYTKSDVIDRT-LKHCDNCGGAIRPDIVLYGEMLDQPTIIRALNKIEHADTLVVLGSSLVVQPAA--GLISHFKGDNLIIINKDRTPYDSDATLVIHDDMVSVVKSLMTE
4BV2 Chain:B ((9-242))
----------LLNESRLTVTLTGAGISTPSGIPDF-----------QN------VFDIDFFYSHPEEFYRFAKEGIFPMLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELHGNVEEYYCVRCEKKYTVEDVIKKLEVPLCDDCNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPAAELPLITVRSGGKLVIVNLGETPFDDIATLKYNMDVVEFARRVMEE
General information:
TITO was launched using:
RESULT:
Template:
4BV2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -118099 for 1790 contacts (-66.0/contact) +
2D Compatibility (PS) -22581 + (NN) -3097 + (LL) 1248
1D Compatibility (HY) -22000 + (ID) 4550
Total energy: -169079.0 ( -94.46 by residue)
QMean score : 0.455
(partial model without unconserved sides chains):
PDB file :
Tito_4BV2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4BV2-query.scw
PDB file :
Tito_Scwrl_4BV2.pdb
: