Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MILKFDHIIHYIDQLDRFS--FPGDVIKLHSGGYHHK-YGTFNKLGYINENYIELLDVENNEKLKKMAKTIEGGVAFATQIVQEKYEQGFKNICLRTNDIEAVKNKLQSEQVEVVGPIQMERDTHKDGKVKWQLLYIMNQDDDEIKPPFFIQWEESDSMRTKKLQKYFQKQFSIETVIVKSKNRSQTVSNWLKWFDMDIVEENDHYTDLILKNDDIYFRIEDGKVSKYHSVIIKDAQATSPYSIFIRGAIYRFEPLV |
3HDP Chain:A ((4-104)) | MSLKVHHIGYAVKNIDSALKKFKRLGYVEESEVVRDEVRKVYIQFVINGGYRVELVAPDGEDSPI------------NKTIK---KGSTPYHICYEVEDIQKSIEEMSQIGYTLFK--------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3HDP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -16835 for 600 contacts (-28.1/contact) +
2D Compatibility (PS) -10338 + (NN) 553 + (LL) 11728
1D Compatibility (HY) -3600 + (ID) 750
Total energy: -19242.0 ( -32.07 by residue)
QMean score : 0.258
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