Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKFNVENEHVEVEIEKLYKFSPELVYEAWTKKDLLKQWFMTSARTNKEIEADVKEGGKYRIVDQQRN-GKVNVIEGIYESLVMDEYVKMTIGMPGLS--ETQDVIEVEFFERETGGTQMLFYYRSLVEKERRFTNLEYKQKKKEYHDAMVHGFELMFDKMYHVIETSTQQ
3PUT Chain:A ((4-154))
-----RSAEHTTFVIERRLTAPVARVFRAWSTPESKRQWFACH--VPLEYALDFRPGGTERNYTA-DTDGLLHAYDARYIDIVPDTRIIYAYEMKLGQTRISASLVTVAFDVEPSG-TRMVFTEQVVFLDGYG------------DNGARLQGTEIGLDNLELFLVRET--
General information:
TITO was launched using:
RESULT:
Template:
3PUT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47048 for 1002 contacts (-47.0/contact) +
2D Compatibility (PS) -15649 + (NN) -1974 + (LL) 1856
1D Compatibility (HY) -4800 + (ID) 1550
Total energy: -69165.0 ( -69.03 by residue)
QMean score : 0.368
(partial model without unconserved sides chains):
PDB file :
Tito_3PUT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PUT-query.scw
PDB file :
Tito_Scwrl_3PUT.pdb
: