Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDVKALKLMTLNDVLSQINGDMTLGIGTGSTMELLLPQMAQLIKERG--YNITGVCTSNKIAFLAKELGIKICEINDVDHIDLAIDGADEVDPSLNIIKGGGGALFREKVIDEMASRFVVVVDETKIVQYLGETFKLPVEVDKFNWYHILRKIESYADIKVERR--VNEDVAFITDNGNYILDCKLPKGIDPYKFHEYLIHLTGVFETGYFLDMADQVIVGTQEGVKILEK
1LK7 Chain:D ((2-229))
--NVEEMKKIAAKEALKFIEDDMVIGLGTGSTTAYFIKLLGEKLK-RGEISDIVGVPTSYQAKLLAIEHDIPIASLDQVDAIDVAVDGADEVDPNLNLIKGRGAALTMEKIIEYRAGTFIVLVDERKLVDYLCQKMPVPIEVIPQAWKAIIEEL-SIFNAKAELRMGVNKDGPVITDNGNFIIDAKFPRIDDPLDMEIELNTIPGVIENGIFADIADIVIVGTREGVKKLER
General information:
TITO was launched using:
RESULT:
Template:
1LK7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -141510 for 1951 contacts (-72.5/contact) +
2D Compatibility (PS) -24593 + (NN) -10801 + (LL) 480
1D Compatibility (HY) -18800 + (ID) 5150
Total energy: -200374.0 ( -102.70 by residue)
QMean score : 0.568
(partial model without unconserved sides chains):
PDB file :
Tito_1LK7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LK7-query.scw
PDB file :
Tito_Scwrl_1LK7.pdb
: