Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNFNQFENQNFFNGNPSDTFKDLGKQVFNYFSTPSFVTNIYETDELYYLEAELAGVNKEDISIDFNN-NTLTIQATRSAKY--KSEQLILDERNFESLMRQFDF-EAVDKQHITASFENGLLTITLPKIKPSNETTSSTSIPIS
1GME Chain:A ((42-150))
---------------------------------ANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKP--EVKAIQIS
General information:
TITO was launched using:
RESULT:
Template:
1GME.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -52121 for 588 contacts (-88.6/contact) +
2D Compatibility (PS) -11138 + (NN) 246 + (LL) 1140
1D Compatibility (HY) -4800 + (ID) 1500
Total energy: -68173.0 ( -115.94 by residue)
QMean score : 0.597
(partial model without unconserved sides chains):
PDB file :
Tito_1GME.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GME-query.scw
PDB file :
Tito_Scwrl_1GME.pdb
: