Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNMNQTIMDAFHFRHATKQFDPQKKVSKEDFETILESGRLSPSSLGLEPWKFVVIQDQALRDELKAHSWGAAKQLD----TASHFVLIFARKNVTSRSPY---VQHMLRDIKKYEAQTIPAVEQKFDAFQADFHISDNDQALYDWSSKQTYIALGNMMTTAALLGIDSCPMEGFSLDTVTDILANKGILDTEQFGLSVMVAFGYRQQDPPKN----KTRQAYEDVIEWVGPKE
1VFR Chain:B ((2-215))
----THPIIHDLENRYTSKKYDPSKKVSQEDLAVLLEALRLSASSINSQPWKFIVIESDAAKQRMHD-SFANMHQFNQPHIKACSHVILFANKLSYTRDDYDVVLSKAVADKRITEEQK----EAAFASFKFVELNCDENGEHKAWTKPQAYLALGNALHTLARLNIDSTTMEGIDPELLSEIFAD----ELKGYECHVALAIGYHHPSEDYNASLPKSRKAFEDVI-------
General information:
TITO was launched using:
RESULT:
Template:
1VFR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56950 for 1417 contacts (-40.2/contact) +
2D Compatibility (PS) -21863 + (NN) -8645 + (LL) 1332
1D Compatibility (HY) -12400 + (ID) 3550
Total energy: -102076.0 ( -72.04 by residue)
QMean score : 0.489
(partial model without unconserved sides chains):
PDB file :
Tito_1VFR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VFR-query.scw
PDB file :
Tito_Scwrl_1VFR.pdb
: