Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIYQKQRNTAETQLNISISDDQSPSHINTGVGFLNHMLTLFTFHSGLSLNIEAQGDIDVDDHHVTEDIGIVIGQLLLEMIKDKKHFVRYGTMYIPMDETLARVVVDISGRPYLSFNASLSKEKVGTFDTELVEEFFRAVVINARLTTHIDLIRGGNTHHEIEAIFKAFSRALGIALTATDDQRVPSSKGVIE
2AE8 Chain:F ((31-208))
-IYQKQR----TQLNISISDDQSPSHINTGVGFLNHMLTLFTFHSGLSLNIEAQG-----DHHVTEDIGIVIGQLLLEMIKDKKHFVRYGTMYIPMDETLARVVVDISGRPYLSFNASLSKEKVGTFDTELVEEFFRAVVINARLTTHIDLIRGGNTHHEIEAIFKAFSRALGIALTAT-------------
General information:
TITO was launched using:
RESULT:
Template:
2AE8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -167592 for 1391 contacts (-120.5/contact) +
2D Compatibility (PS) -17992 + (NN) -6842 + (LL) 1052
1D Compatibility (HY) -25200 + (ID) 8450
Total energy: -225024.0 ( -161.77 by residue)
QMean score : 0.591
(partial model without unconserved sides chains):
PDB file :
Tito_2AE8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2AE8-query.scw
PDB file :
Tito_Scwrl_2AE8.pdb
: